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Red Crown Rot of Soybeans

Author: Syngenta Agronomist

Categories: SOYBEAN DISEASE MANAGEMENT, Growing, SOYBEAN
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INSIGHTS

  • Red crown rot is a soybean fungal disease recently observed in Midwestern states caused by early season infection of C. ilicicola.

  • Key diagnostic feature is reddish discoloration of stem at soil line that may include bright, red-orange colored perithecia or reproductive structures appearing as tiny red balls.

  • Management options include using a seed treatment, crop rotation, controlling root nematodes, and potentially delayed planting.

Crown rot map
Figure 1. Red crown rot range through 2025. Map adapted from Crop Protection Network.

What is Red Crown Rot?

Red Crown Rot is a relatively newer soybean disease observed in the Midwest (Figure 1) that is caused by a soil-borne fungal pathogen, Calonectria ilicicola (anamorph: Cylindrocladium parasiticum).

  • First observed in Illinois in 2017

  • Occurs worldwide in warm temperate and tropical regions

  • Characterized by reddish discoloration on the crown or lower stem at the soil line, often associated with fungal reproductive structures.

  • The same pathogen also impacts other crops such as peanuts, ginger, and blueberries and has been found in the Southern U.S. since the 1970s.

Interveinal chlorosis and necrosis
Image 1. Interveinal chlorosis and necrosis caused by red crown rot of soybeans. Image by A. Peterson, IL Soybean Assoc.
Red discoloration
Image 2. Symptomatic plant roots. Image by N. Prater, Syngenta agronomist

How does Red Crown Rot Spread?

Once introduced to a field, C. ilicicola can persist in the soil for several years as microsclerotia

  • Wet spring conditions can increase the risk of infection

  • Red crown rot can spread within and between fields when spores move by rain splash or runoff

  • Spores can also travel in infested soil and crop residue moved by wind, equipment, or livestock

What conditions encourage Red Crown Rot?

Symptoms are often first noticed in poorly drained or low areas of a field. Warm, wet weather during the growing season can further increase disease development, especially when soil temperatures are between 77° and 86°F

Red-orange colored
Figure 2. Red discoloration at soil line on a soybean stem caused by red crown rot. Image by N. Prater, Syngenta

Symptoms

  • Visual signs usually appear later in the season, typically from R3 to R7

  • Infected plants or small patches are often scattered randomly across the field

  • A key diagnostic feature is reddish discoloration at the stem base near the soil line, sometimes with tiny red-orange perithecia (Image 2 and Figure 2).

  • Internal stem tissue may appear gray-brown, and roots may rot as disease progresses

  • Leaf yellowing may occur after R3; severely affected plants may senesce early while leaves remain attached.

  • Foliar symptoms resemble sudden death syndrome (SDS) and brown stem rot (BSR), with interveinal chlorosis and necrosis (Image 1), so both stems and roots should be inspected for diagnosis.

  • Later in the season, infected plants may develop yellowing and browning between the leaf veins as toxins from the pathogen move into the leaves.

  • Late-season identification can be difficult; submit samples to a state plant diagnostic lab for confirmation.

Management

Yield losses from red crown rot have been reported as high as 30% in soybeans1,2, warranting the need for multiple management options.

  • Delayed planting may help lessen the severity of red crown rot infection.

  • Sanitize equipment before leaving a field if there is known infection to help avoid mechanical transmission.

  • Managing root-damaging nematodes can help reduce root injury and potential infection sites for red crown rot.

  • Seed treatments labeled specifically for red crown rot have shown reductions in damage.

    • Victrato® seed treatment: Labeled specifically for Red Crown Rot (RCR), Sudden Death Syndrome (SDS) and multiple species of nematodes

    • Saltro® fungicide seed treatment: Saltro has a 2(ee) label for RCR suppression in Arkansas, Illinois, Indiana Iowa, Kentucky, Michigan, Minnesota, Missouri, Ohio, Tennessee and Wisconsin. In addition to RCR, Saltro protects against SDS and nematodes.

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